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2018/12/20Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
2018/11/12AI-based solution for Identification of Immunopeptides with LC-MS
2018/11/01Post-Translational Modification Analysis with PEAKS Studio (Application Note)
2018/11/01MS-based Immunopeptidomics Analysis with PEAKS Studio X (Application Note)
2018/11/01Feature-based Peptide Identifications with PEAKS Studio X (Application Note)
2018/10/01A New Algorithm for Identification of Immunopeptides from LC-MS Data with High Sensitivity
2018/09/10Towards the Comprehensive Mass Spectrometry-based Biopharmaceutical Analysis using PEAKS MAPS
2018/06/07In-Depth Proteomics Analysis Using a TIMS-QTOF with the PASEF Method and Deep Learning
2018/06/07Towards Real-time Proteomics Data Analysis using PEAKS Online 8.5
2018/06/07Utility of EThcD and AI-ETD for the Differentiation of Leucine and Isoleucine Residues in Large-Scale Shotgun Proteomic Experiments
2018/06/07Automated de novo Sequencing of Antibodies with Isoleucine/Leucine Differentiation by Using EThcD Fragmentation
2018/03/12Increased Accuracy of Peptide de novo Sequencing Using Complementary AI-ETD and HCD Fragmentation
2018/01/10Complete protein de novo sequencing from antibody mixtures by LC-MS/MS
2018/01/10New Peptide Mapping Approaches for Complete Characterization of Purified Antibodies
2017/09/17Quantitative Profiling of Post-Translational Modifications by SILAC approach with PEAKS
2017/09/13SILAC-based Quantitative Proteome Analysis with PEAKS (Application Note)
2017/07/18De novo peptide sequencing by deep learning
2017/06/08Monoclonal Antibody de novo Sequencing by Deep Learning
2017/06/07Label-free Quantification with PEAKS (Application Note)
2017/06/06N-Linked Glycan Profiling for Monoclonal Antibodies with PEAKS AB Software Platform using LC-MS/MS
2017/06/06Antibody Sequence Validation by Peptide and Disulfide Bond Mapping
2017/06/05Analysis of EThcD Spectra with PEAKS Platform for de novo Sequencing and Peptide Identification
2017/03/20PEAKS AB: A software platform for LC-MS/MS based therapeutic protein characterization
2017/01/07Methionine oxidation analysis in therapeutic protein samples with PEAKS AB software
2016/09/19PEAKS AB – A software tool for monoclonal antibody sequencing and characterization with LC-MS/MS
2016/08/26Complete De Novo Assembly of Monoclonal Antibody Sequences
2016/06/05Protein-based PTM Quantitative Analysis by LC-MS/MS with PEAKS (Application Note)
2016/06/05New Cross Experiment Quantification Tool for SILAC/TMT: PEAKS Q
2016/06/05Towards the automated monoclonal antibody sequencing and characterization from LC-MS/MS data
2016/02/20Monoclonal Antibody (mAb) Characterization Using – PEAKS – Data Analysis Overview
2015/09/27PEAKS AB – A Reliable Workflow for Monoclonal Antibody Characterization
2015/06/03Peptide Mapping for Quantitative Profiling of Peptide Variants using PEAKS
2015/03/15Quantitative analysis of endogenous peptides with LC-MS/MS directly from complex secretome samples
2014/06/15Comparison of Label Free Quantification Tools
2014/06/15Protein Identification and Quantitative Analysis with N-terminal Sequencing by Mass Spectrometry
2014/03/31New LC MSMS Analysis Workflow to Discover Endogenous Peptides in Complex Bottom-Up Proteomics Data and Secretome Samples
2014/03/22Integrating de novo Sequencing and Database Search to Improve the Peptide Identification
2014/03/03Integrating Database Search and de novo Sequencing to Improve the Peptide Identification
2013/09/14A New Algorithm for Peptide de novo Sequencing with Multiple Complementary Spectra
2013/09/14PEAKS – A Software Tool for Shotgun Label Free Proteomics with High Sensitivity and High Accuracy
2013/07/15A Combinatorial Approach to the Peptide Feature Matching Problem for Label-Free Quantification
2013/06/11Peptide de novo Sequencing Result Validation
2013/06/10Whole Protein de novo Sequencing from MS/MS
2013/06/09Peptide Identification Using Protein Sequence Databases Derived from RNA-Seq Data
2013/06/09Deconvolution of Overlapping Peptide Isotopic Peak Clusters with EM Algorithm for Label-Free Quantification
2013/06/09Software for Integrated and Interactive Visualization of LC-MS Data and Peptide Identification Results
2013/03/02Integrating de novo Sequencing and Database Search for Monoclonal Antibody Sequencing
2012/10/01PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification
2012/09/09In Depth Analysis of Protein Amino Acid Sequence and PTMs with High-Resolution Mass Spectrometry
2012/09/09GlycoMaster DB: A Software Tool for Automated Glycopeptide Identification from MS/MS
2012/09/09Analysis of Post Translational Modifications with AB SCIEX 5600 TripleTOF System
2012/05/22Peptide Identification with High Mass Accuracy using Lock Mass Calibration
2012/05/22Combine Multiple Database Search Engines with Uniform FDR
2012/05/21Cross-Species Search for Accurate and Sensitive Peptide Identification
2012/05/20Analysis of post translational modifications with AB SCIEX TripleTOF 5600 System
2012/05/19GlycoMaster: Glycopeptide High-Throughput Identification and Characterization Software
2012/05/19Optimized Database Search Software for Peptide Identification with AB SCIEX TripleTOF 5600
2012/05/19How Useful Is the Product Ion Mass Accuracy for Peptide Identification?
2012/05/19In Depth Analysis of the Spectra Unassigned by Database Search
2012/03/17Integrating de novo Sequencing and Database Search for Peptide Identification
2012/02/01De Novo Sequencing and Homology Searching
2011/09/04ETD is Better, Period.
2011/09/04More Accurate Control of the False Discovery Rate in Mass Spectrometry Based Peptide Identification
2011/09/03Identifying More Peptides at a Lower False Discovery Rate with PEAKS DB Software
2011/09/03A Robust and Effective Strategy for Combining Results of Multiple Peptide Identification Engines
2011/06/08New Computational Method for Identifying Peptides with Unspecified Post-Translational Modifications
2011/06/05PEAKS DB: New Software for Substantially Improved Peptide Identification from Orbitrap ETD Mass Spectrometry
2011/06/05De Novo Sequencing vs. Database Search
2011/06/05Improvement in Analytical Software Makes a Difference on the Decision Tree Driven
2011/05/24PeaksPTM: Mass Spectrometry-Based Identification of Peptides with Unspecified Modifications
2011/01/20PEAKS DB – Substantially Improved Peptide Identification.
2010/12/01ADEPTS: advanced peptide de novo sequencing with a pair of tandem mass spectra
2010/05/26Systematic Assessment of the Reproducibility of Relative Quantification Based on LC-MS with Replicates
2010/05/24No News is Good News: de novo Determination of Amino Acids when Peaks are Missing
2010/05/23Determining the False Discovery Rate for Peptide Identification without a Decoy Database
2010/05/23Precursor Mono-Isotopic Mass and Charge Determination with Almost 100% Accuracy
2010/01/18Better score function for peptide identification with ETD MS/MS spectra
2009/09/01Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy
2009/06/03Automated Multiple Round Searches to Increase Coverage of Peptide-Protein Identification
2009/06/03Modeling ETD Fragmentation with Bayesian Network for Peptide Identification
2009/05/31PTM Finder Based on PEAKS De Novo Sequencing Result
2009/05/31New Algorithm for Label-Free Protein Quantification
2009/03/01De Novo Interpretation of Tandem Mass Spectra
2008/06/04SPIDER: Novel Scoring Function Improves Homology Searches using MS/MS de novo Sequencing Results
2008/06/03PEAKS Online: A Free MS/MS de novo Sequencing and Protein ID Online Public Server
2008/06/03New Method for the Validation of de novo Sequencing Results
2008/06/02New Quantitation Software Package Based on PEAKS Protein ID
2007/06/06Peptide Sequence Reconstruction from de novo Sequences and their Homologues
2007/06/03Disulfide bonded Dipeptide Analysis with PEAKS and Q-TOF Mass Spectrometry
2007/06/03Improving Protein Coverage by de novo Sequence Homology Searching with SPIDER
2007/05/01Search for the Undiscovered Peptide, Using de novo sequencing and sequence tag homology search to improve protein characterization
2006/07/01Software for computational peptide identification from MS-MS data
2006/06/01PEAKS de novo performance on LTQ Orbitrap data
2006/05/30PEAKS Q: Software for MS-based quantification of stable isotope labeled peptides
2006/05/28Filtering out MS/MS spectra of insufficient quality before database searching
2006/05/28Improved positional confidence score in MS/MS peptide de novo sequencing
2006/05/28Intact Peptide Charge Determination from Ion Trap MS/MS
2006/05/18Drastically increased coverage by using four search engines for Protein Identification
2005/07/01SPIDER: Software for Protein Identification from Sequence Tags Containing De Novo Sequencing Error
2005/06/06Assessment of an Amalgamative Approach to Protein Identification
2005/06/05Improving the de novo Sequencing Accuracy by Combining Two Independent Scoring Functions in PEAKS Software
2004/05/24Protein ID: Comparing De Novo Based and Database Search Methods
2003/08/21PEAKS: Powerful software for peptide de novo sequencing by tandem mass spectrometry
2003/06/08A Comparative Study of Peptide Sequencing Software Tools for MS/MS