Supported Data Formats
Instrument Formats
| Vendor | Instrument | Data Type | Converter & Set Up |
|---|---|---|---|
| Thermo | Ion Trap / Orbitrap | raw | MSFileReader |
| Agilent | Ion Trap / Q-TOF | yep / d | CompassXtract / MassHunter |
| Bruker | Q-TOF / Ion Trap / timsTOF Pro / TOF TOF | baf / yep / tdf / lift | CompassXtract |
| SCIEX | TripleTOF / QSTAR / QTRAP TOF TOF |
wiff2 / wiff t2d |
ProteoWizard-MSConvert Extractor |
| Shimadzu | AXIMA-CFR | run | Kratos Converter |
| Varian | FTICR / Ion Trap | sms / xms | VarianMS |
| Waters | Q-TOF | raw | MassLynx |
Additional Supported Standard Data Formats
- .DAT (AB converter)
- .DTA (Sequest)
- .MGF (Mascot)
- .mzData (HUPO format)
- .mzML (including mzIdentML)
- .mzXML
- .PepXML
- .PKL (MassLynx)
- .XML (mzData schema)
- .XML (mzXML schema)