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Data Conversion Help

One of the biggest hurdles in working with MS/MS spectra is dealing with the various data formats that each instrument manufacture adhers to. In some cases it is not only manufacturer specific but instrument specific as well. In the links below you will find data conversion tool links and supporting installation instructions. Please keep in mind that some of these tools are freeware and may be unsupported or unsuitable to your situation. We hope that they help you with your data conversion needs.

An interesting format called mzXML is gaining recognition in the mass spectrometry community. At BSI, we support the introduction of a global standard of mass spectra data for information exchange.

ABI 4700-4800

ABI QStar and QTrap

Agilent

Bruker

Thermo

Varian

Waters/Micromass

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