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de novo sequencing and protein ID
Software

PEAKS

PEAKS Online

The server/cluster version of the popular mass spectrometry software PEAKS Studio. PEAKS Online provides high-throughput on a shared resource.

It is fully parallelized, with the ability to run on any cluster or multi-CPU machine. PEAKS Online not only performs database protein identification, but automated de novo sequencing. Combined, these two methods identify peptides/proteins given MS/MS tandem spectral data. The results are displayed in HTML via a built-in web server. Links to the results are e-mailed to the user after analysis. This means that everyone in your institution, who has a browser, an e-mail address and access to the cluster, can submit data and view results.

A common practise is to connect PEAKS Online with PEAKS Client for batch submission of jobs and preprocessing from RAW data, but there is even more that can be achieve with PEAKS Client, such as sequence reconstruction, inChorus meta protein identification and much more! For more details about PEAKS Client's capabilies, click here.

If you would care to test out this resource for your self and start processing right away, visit PEAKS Online. This link will bring you to our free public data analysis site. Simply sign up and start your analysis today. No software to install and an automated email service to notify you when your results are done.