PEAKS is a software pipeline for LC-MS/MS data analysis to provide systematic identification and quantification of the complete complement of proteins in a complex biological system.
Starting from raw mass spectrometry instrument data PEAKS effectively performs peptide and protein identification, PTM and mutation characterization, quantification (label and label free) as well as result validation, visualization and reporting.
"PEAKS has helped us to identify unmatched results or confirm ambiguous sequences found by standard database searching methods. As a whole, the sequence coverage increased dramatically for some of the proteins under investigation."
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